Alt-Enter is used by Midnight Commander, and by default Windows Terminal maps this to toggle fullscreen (which is also done via F11). To remove the mapping for Alt-Enter, add the following to your keybindings:
{
"keys": "alt+enter",
"id": null
}
that is, put it in the "keybindings" array thus:
{
"keybindings":
[
...
{
"id": null,
"keys": "alt+enter"
}
...
],